STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0991Transcriptional regulator, LysR family; Similar to PID:1652912; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family. (308 aa)    
Predicted Functional Partners:
VC_0787
Transcriptional regulator, LysR family; Similar to SP:P46068 PID:1050466 GB:U00096 PID:1788706 PID:1799763; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.761
VC_A0964
Glycine cleavage operon activator, putative; Similar to GB:L42023 SP:P45099 PID:1007064 PID:1221317 PID:1205437; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.746
VC_A0833
Transcriptional regulator, LysR family; Similar to GB:AE000657; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.682
VC_1588
Transcriptional regulator, LysR family; Similar to PID:727227 SP:P52666; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.680
VC_A0992
Glutaredoxin 2; Similar to GB:U00096 PID:1743238 PID:1787303; identified by sequence similarity; putative.
 
     0.670
VC_1561
Transcriptional regulator, LysR family; Similar to SP:P10183 PID:150233; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.652
VC_2760
Transcriptional regulator, LysR family; Similar to SP:P37598 GB:U00096 PID:1742732 PID:1742742 PID:1787949; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.623
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity).
  
 
 
 0.607
VC_1617
Transcriptional regulator, LysR family; Similar to GB:X73124 SP:P39592 PID:413948 GB:AL009126; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.605
VC_2485
Transcriptional regulator, LysR family; Similar to GB:D10483 SP:P10151 GB:M21150 PID:1128961 PID:146605; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.571
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.