STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0992Glutaredoxin 2; Similar to GB:U00096 PID:1743238 PID:1787303; identified by sequence similarity; putative. (218 aa)    
Predicted Functional Partners:
VC_A0993
N-ethylmaleimide reductase; Similar to GB:U00096 SP:P77258 PID:1711244 PID:1787939; identified by sequence similarity; putative.
       0.776
rtxC
RTX toxin activating protein; Involved in fatty acylation of the protoxin (RtxA) at two internal lysine residues, thereby converting it to the active toxin. The acyl donor is ACP (By similarity).
  
     0.675
VC_A0991
Transcriptional regulator, LysR family; Similar to PID:1652912; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
 
     0.639
VC_1317
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.588
rtxA
RTX toxin RtxA; [Multifunctional-autoprocessing repeats-in-toxin]: Precursor of a multifunctional toxin that causes destruction of the actin cytoskeleton by covalent cross-linking of actin and inactivation of Rho GTPases when translocated into the host cytoplasm. Upon translocation into the host cell, undergoes autoprocessing in cis mediated by the peptidase C80 domain (also named CPD domain): the protease activity is activated upon binding inositol hexakisphosphate (InsP6) present at the host cell membrane and delivers the Cysteine protease domain-containing toxin F3 chain to the host [...]
  
   
 0.588
VC_A0065
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.489
VC_A0400
Acetyltransferase, putative; Similar to GB:AE000657; identified by sequence similarity; putative.
  
     0.468
VC_A0479
Acetyltransferase, putative; Similar to GB:AE000657; identified by sequence similarity; putative.
  
     0.468
VC_1644
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.430
alaE
Conserved hypothetical protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.409
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.