Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0997Hypothetical protein; Identified by Glimmer2; putative. (241 aa)    
Predicted Functional Partners:
VC_A0996
ABC transporter, ATP-binding protein; Similar to GB:L42023 PID:1006302 PID:1221167 PID:1205301 SP:Q57180; identified by sequence similarity; putative.
       0.562
VC_2097
Esterase/lipase YbfF, putative; Similar to GB:U00096 PID:1786902; identified by sequence similarity; putative.
      0.548
VC_A0185
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.496
VC_0030
Acetolactate synthase II, small subunit; Similar to GB:M87049 SP:P13048 GB:X02413 GB:X04890 PID:146459; identified by sequence similarity; putative.
  
     0.489
VC_0302
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.406
VC_0486
Transcriptional regulator, DeoR family; Similar to GB:J02708 SP:P15082 GB:X13463 PID:146282 PID:41630; identified by sequence similarity; putative.
      
 0.406
VC_1193
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.405
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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