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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A1012Conserved hypothetical protein; Identified by Glimmer2; putative. (155 aa)    
Predicted Functional Partners:
VC_A1013
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.981
dcuC
C4-dicarboxylate transporter, anaerobic; Responsible for the transport of C4-dicarboxylates during anaerobic growth; Belongs to the DcuC/DcuD transporter (TC 2.A.61) family.
  
     0.614
VC_1731
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.582
VC_A0076
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.534
VC_2473
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.512
VC_2739
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.508
VC_1314
Transporter, putative; Similar to GB:AE000657; identified by sequence similarity; putative.
  
     0.486
VC_1153
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.480
VC_0765
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.471
VC_A1014
Hypothetical protein; Identified by Glimmer2; putative.
       0.468
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.