STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A1041Phosphomannomutase, putative; Similar to GB:AE000520; identified by sequence similarity; putative. (567 aa)    
Predicted Functional Partners:
rfbA
Mannose-1-phosphate guanylyltransferase; Similar to GB:X59554 SP:Q07024 PID:48383; identified by sequence similarity; putative.
  
 
 0.783
VC_2523
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.684
VC_2095
Phosphoglucomutase; Similar to SP:P36938 GB:U08369 PID:473888 GB:U00096 PID:1651293; identified by sequence similarity; putative.
  
 
 0.626
VC_0934
Capsular polysaccharide biosynthesis glycosyltransferase, putative; Similar to GB:U00096 SP:P71241 PID:1407618 PID:1736749 PID:1736753; identified by sequence similarity; putative.
  
  
 0.594
VC_A0141
C4-dicarboxylate transport sensor protein, putative; Similar to SP:P10047 GB:X06253 GB:Z11529 PID:46179 PID:46182; identified by sequence similarity; putative.
      
 0.579
VC_1108
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   0.562
VC_0269
Mannose-6-phosphate isomerase; Similar to SP:P25081 GB:X57117 PID:48820; identified by sequence similarity; putative; Belongs to the mannose-6-phosphate isomerase type 1 family.
  
 
 0.541
VC_1827
Mannose-6-phosphate isomerase; Similar to GB:M15380 SP:P00946 PID:146722 GB:U00096 PID:1742663; identified by sequence similarity; putative; Belongs to the mannose-6-phosphate isomerase type 1 family.
  
 
 0.541
VC_A1039
Amino acid ABC transporter, periplasmic amino acid-binding protein; Similar to GB:U00096 SP:P39174 PID:1736579 PID:1736587 PID:1788228; identified by sequence similarity; putative.
       0.530
VC_A1040
Amino acid ABC transporter, permease protein; Similar to GB:AE000782; identified by sequence similarity; putative.
       0.530
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.