Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_A1072Conserved hypothetical protein; Identified by Glimmer2; putative. (232 aa)    
Predicted Functional Partners:
VC_A1071
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.865
VC_0303
Sensor histidine kinase; Similar to GP:2808665; identified by sequence similarity; putative.
 
  
 0.672
VC_A1070
Hypothetical protein; Identified by Glimmer2; putative.
       0.653
VC_A0530
Pyruvate-flavoredoxin oxidoreductase; Similar to GB:U00096 PID:1742250 PID:1742256 PID:1787642; identified by sequence similarity; putative.
      
 0.564
VC_A1074
Transcriptional regulator, AraC/XylS family; Similar to PID:1185446 SP:Q51872; identified by sequence similarity; putative.
 
     0.558
VC_A0667
Sodium/solute symporter; Similar to PID:1653432; identified by sequence similarity; putative; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.495
VC_1346
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.471
VC_1492
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.470
VC_0775
Vibriobactin synthesis protein, putative; Similar to GB:M60177 SP:P11454 GB:M17354 PID:145843 PID:551801; identified by sequence similarity; putative.
   
    0.456
VC_0132
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.428
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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