STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A1081Hypothetical protein; Identified by Glimmer2; putative. (220 aa)    
Predicted Functional Partners:
VC_A1082
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.987
VC_A1080
Secretion protein, HlyD family; Similar to GP:1314576; identified by sequence similarity; putative.
 
  
 0.980
VC_A1084
Toxin secretion ATP-binding protein; Similar to GB:L12145 GB:X68815 GB:X80055 SP:Q04473 PID:38959; identified by sequence similarity; putative.
 
  
 0.974
VC_A1083
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.864
VC_1621
Agglutination protein; Similar to GB:M64540 PID:150976; identified by sequence similarity; putative.
 
   
 0.846
pdxH
Pyridoxamine 5`-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.732
VC_1447
RTX toxin transporter; Similar to GP:4455068; identified by sequence similarity; putative.
 
  
 0.576
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.556
VC_2750
GGDEF family protein; Similar to PID:1653584; identified by sequence similarity; putative.
  
 
 0.541
VC_A0785
GGDEF family protein; Similar to PID:1651932; identified by sequence similarity; putative.
   
 
 0.500
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.