Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_A1084Toxin secretion ATP-binding protein; Similar to GB:L12145 GB:X68815 GB:X80055 SP:Q04473 PID:38959; identified by sequence similarity; putative. (704 aa)    
Predicted Functional Partners:
VC_A1080
Secretion protein, HlyD family; Similar to GP:1314576; identified by sequence similarity; putative.
 
 0.995
VC_A1081
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.974
VC_1447
RTX toxin transporter; Similar to GP:4455068; identified by sequence similarity; putative.
 
 
 0.963
VC_A1082
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.944
VC_1621
Agglutination protein; Similar to GB:M64540 PID:150976; identified by sequence similarity; putative.
 
  
 0.880
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.821
VC_A1083
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.782
VC_A0047
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.776
VC_1659
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.761
viuB
Vibriobactin utilization protein ViuB; Involved in intracellular removal of iron from iron- vibriobactin complex. Vibriobactin is an iron-chelating compound involved in the transport of iron from the bacterial environment into the cell cytoplasm (By similarity); Belongs to the SIP oxidoreductase family.
   
   0.730
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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