STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0028Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (84 aa)    
Predicted Functional Partners:
CV_2001
Probable microbial collagenase; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.605
CV_0029
Hypothetical protein.
  
    0.571
hcnB
Hydrogen cyanide synthase HcnB; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0446.
 
 
 0.536
CV_3286
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.511
CV_4095
Probable rhodanese-related sulfurtransferases; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0607.
 
 
 0.494
CV_1888
Hypothetical protein.
 
     0.470
CV_4017
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3293.
  
     0.462
CV_1369
Hypothetical protein.
  
   0.461
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
 
 0.412
CV_0385
Probable transcriptional regulator, TetR family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1309.
  
     0.401
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.