Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CV_0056Probable aminopeptidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2234. (415 aa)    
Predicted Functional Partners:
lasB
Class 4 metalloprotease; Extracellular zinc metalloprotease.
 
  
 0.892
CV_3255
Probable secreted protease; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.732
CV_3506
Probable protease precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.708
CV_0362
Probable thermolabile hemolysin, lecithin dependent; Identified by sequence similarity; putative; ORF located using Blastx/COG3240.
  
     0.691
CV_0360
Probable thermolabile hemolysin; Identified by sequence similarity; putative; ORF located using Blastx/COG3240.
  
     0.688
CV_1019
Probable TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1629/TC:1.B.14.1.6.
  
     0.567
CV_2714
Probable triacylglycerol lipase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1075.
  
     0.563
CV_0058
Hypothetical protein.
       0.535
hetM
Polyketide synthase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG3320.
  
    0.520
lipH
Lipase modulator protein; May be involved in the folding of the extracellular lipase during its passage through the periplasm; Belongs to the lipase chaperone family.
  
   
 0.496
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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