STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0069Probable secretion protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0845/TC:8.A.1.3.1. (416 aa)    
Predicted Functional Partners:
CV_0068
Probable colicin V secretion atp-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2274/TC:3.A.1.110.2.
 
 0.988
CV_4400
Probable colicin V secretion ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2274.
 
 0.922
cydC
ATP-binding/permease fusion ABC transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2274/TC:3.A.1.109.1.
 
 
 0.895
hlyB
Identified by sequence similarity; putative; ORF located using Blastx/COG2274/TC:3.A.1.109.1.
 
 
 0.890
CV_0307
Probable ABC transporter, ATP-binding/permease fusion; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2274/TC:3.A.1.109.1.
 
 
 0.883
macB
Probable ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.813
oprM
Outer membrane efflux protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1538.
  
 
 0.808
CV_0308
Probable agglutination protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1538.
 
 
 0.719
natC
Periplasmic type I secretion system; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1538/TC:1.B.17.1.1.
 
 
 0.669
CV_1734
Probable outer membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1538/TC:1.B.17.2.1.
 
 
 0.630
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.