Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CV_0094Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1639. (273 aa)    
Predicted Functional Partners:
CV_4087
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2199.
 
      0.583
CV_0812
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2199.
  
   0.564
CV_3444
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1366.
  
     0.543
CV_0384
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0834.
  
     0.515
CV_0095
Probable methyl-accepting chemotaxis transducer; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0840.
       0.494
CV_1907
Hypothetical protein.
  
     0.485
fleN
Flagellar synthesis regulator FleN; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0455.
 
     0.458
CV_0181
Probable response regulator; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.449
flgI1
Flagellar P-ring protein precursor flgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.443
CV_1587
Probable sensory box/GGDEF family protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2199.
 
      0.441
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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