Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0102Probable ABC transporter, periplasmic substrate-binding; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834. (253 aa)    
Predicted Functional Partners:
CV_1602
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0834.
  
     0.774
CV_4308
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.774
CV_2821
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834.
  
     0.773
CV_2806
Probable amino acid ABC transporter; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834.
  
     0.772
CV_1638
Probable amino acid ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG0834.
  
     0.771
CV_2428
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834.
  
     0.771
CV_3361
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0834.
  
     0.769
CV_0116
Probable ABC transporter, periplasmic substrate-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834.
  
     0.762
glnH
Glutamine transport system substrate-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834/TC:3.A.1.3.2.
  
     0.760
CV_3322
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.750
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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