Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tolRTolR protein; Identified by sequence similarity; putative; ORF located using Blastx/TC:2.C.1.2.1. (137 aa)    
Predicted Functional Partners:
tolB
TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.974
tolQ
tolQ-related transport transmembrane protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.972
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 
 0.926
CV_0399
Probable exbB-like biopolymer transport; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0811/TC:2.C.1.2.1.
 
 
 0.916
exbB1
Biopolymer transport protein; Identified by sequence similarity; putative.
 
 
 0.890
exbB2
Biopolymer transport protein; Identified by sequence similarity; putative.
 
 
 0.890
CV_0108
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0810/TC:2.C.1.1.1.
  
 
 0.847
exbD5
Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative;/COG0848/TC:2.C.1.1.1.
  
     0.766
exbD1
Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0848.
  
     0.766
rmpM
Outer membrane protein A precursor; Identified by sequence similarity; putative; ORF located using Blastx/COG2885/TC:1.B.6.1.1.
 
 
 
 0.724
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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