STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0108Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0810/TC:2.C.1.1.1. (297 aa)    
Predicted Functional Partners:
tolB
TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   0.921
tolR
TolR protein; Identified by sequence similarity; putative; ORF located using Blastx/TC:2.C.1.2.1.
  
 
 0.847
CV_3617
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0810/TC:3.D.3.1.1.
  
 
 
 0.771
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
 
 
 0.753
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
  
 0.673
CV_0105
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx.
 
     0.644
CV_1128
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.632
CV_1474
Probable bacteriophage protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0840.
   
   0.615
CV_2121
Probable bacteriophage tail protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0730.
   
   0.615
CV_3861
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
   
   0.615
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.