STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0113Probable aspartate/glutamate racemace protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1794. (250 aa)    
Predicted Functional Partners:
CV_0797
Probable asparagine synthase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0367.
    
 0.918
asnB
Asparagine synthetase, glutamine-hydrolysing; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0367.
    
 0.918
CV_3959
Probable asparagine synthetase B; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0367.
    
 0.918
pyrB
Aspartate carbamoyltransferase catalytic chain; Identified by sequence similarity; putative; ORF located using Blastx/COG0540; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.916
ansA
Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0252.
    
 0.916
aspA
Aspartate ammonia-lyase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1027.
    
 0.913
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
     
 0.901
pyrI
Aspartate carbamoyltransferase; Involved in allosteric regulation of aspartate carbamoyltransferase.
     
  0.900
purA1
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
  0.900
argG
Argininosuccinate synthase; Identified by sequence similarity; putative; ORF located using Blastx/COG0137; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
  0.900
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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