Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0116Probable ABC transporter, periplasmic substrate-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834. (246 aa)    
Predicted Functional Partners:
CV_0102
Probable ABC transporter, periplasmic substrate-binding; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834.
  
     0.762
CV_4308
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.752
CV_3309
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0834.
  
     0.742
CV_1638
Probable amino acid ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG0834.
  
     0.738
CV_1602
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0834.
  
     0.728
CV_3361
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0834.
  
     0.727
CV_2821
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834.
  
     0.725
CV_0248
Hypothetical protein.
  
     0.721
CV_1671
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834.
  
     0.699
CV_0698
Hypothetical protein.
  
     0.681
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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