Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gltLABC superfamily (glutamate/aspartate transporter), ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1126. (244 aa)    
Predicted Functional Partners:
gltK
Glutamate/aspartate transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0765/TC:3.A.1.3.4.
 0.998
gltJ
Glutamate/aspartate transport system permease; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0765/TC:3.A.1.3.4.
 0.998
CV_2982
Probable amino-acid transport system permease ABC transporter protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0765/TC:3.A.1.3.10.
 
 0.992
CV_4052
Probable amino acid ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.10.
 
 0.992
CV_0120
Probable amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834/TC:3.A.1.3.4.
 0.978
glnP
Glutamine transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.2.
 
 
 0.939
CV_1274
Probable permease of ABC transporter; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0765/TC:3.A.1.3.12.
 
 
 0.935
livM
Leucine/isoleucine/valine transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0559/TC:3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
 
    
 0.897
CV_4396
Probable ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0577.
 
      0.836
hisM2
Histidine transport system membrane protein M; Identified by sequence similarity; putative; ORF located using Blastx/COG0765/TC:3.A.1.3.11.
  
 0.821
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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