Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gltKGlutamate/aspartate transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0765/TC:3.A.1.3.4. (222 aa)    
Predicted Functional Partners:
gltL
ABC superfamily (glutamate/aspartate transporter), ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1126.
 0.998
CV_0120
Probable amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834/TC:3.A.1.3.4.
 
 0.982
gltJ
Glutamate/aspartate transport system permease; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0765/TC:3.A.1.3.4.
 
 
0.981
aotJ
Arginine/ornithine transport system substrate-binding protein (ABC superfamily); Identified by sequence similarity; putative; ORF located using Blastx/COG0834/TC:3.A.1.3.11; Belongs to the bacterial solute-binding protein 3 family.
 
 0.979
CV_4053
Probable amino acid ABC transporter, periplasmic-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0834/TC:3.A.1.3.10.
 
 0.976
CV_1275
Probable ABC transporter, periplasmic-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0834/TC:3.A.1.3.10; Belongs to the bacterial solute-binding protein 3 family.
 
 0.956
CV_2981
Probable cystine transport ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1126.
 
 0.936
fliY
Amino acid ABC transporter, periplasmic-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0834/TC:3.A.1.3.10; Belongs to the bacterial solute-binding protein 3 family.
 
 0.929
CV_2983
Probable amino acid ABC transporter, periplasmic-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834/TC:3.A.1.3.10; Belongs to the bacterial solute-binding protein 3 family.
 
 0.904
argT
Subunit of the lysine/arginine/ornithine transporter (ABC superfamily); Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834/TC:3.A.1.3.1; Belongs to the bacterial solute-binding protein 3 family.
 
 0.890
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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