Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0129Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (163 aa)    
Predicted Functional Partners:
CV_0464
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.526
CV_2484
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2311.
  
     0.505
CV_0462
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2329.
  
     0.475
CV_0130
Probable Xaa-Pro aminopeptidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0006; Belongs to the peptidase M24B family.
       0.455
CV_1838
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.451
CV_0131
Probable benzoate membrane transport protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3135/TC:2.A.46.1.1.
 
     0.413
CV_1776
Probable regulatory protein, MarR family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1846.
  
     0.402
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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