Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0130Probable Xaa-Pro aminopeptidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0006; Belongs to the peptidase M24B family. (462 aa)    
Predicted Functional Partners:
CV_0131
Probable benzoate membrane transport protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3135/TC:2.A.46.1.1.
       0.532
pepD
Aminoacyl-histidine dipeptidase precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2195.
  
 
 0.492
CV_0133
Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/COG1167.
 
     0.462
CV_0129
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
       0.455
CV_0127
Probable Cytidine deaminase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2131.
  
  
 0.424
pepN
Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0308.
  
 
 0.422
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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