Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0148Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1737. (282 aa)    
Predicted Functional Partners:
glk
Glucokinase; Identified by sequence similarity; putative; ORF located using Blastx/COG0837; Belongs to the bacterial glucokinase family.
  
 0.986
pgl
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
 
   
 0.851
eda
2-dehydro-3-deoxy-phosphogluconate aldolase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0800.
 
   
 0.802
pgi2
Glucose-6-phosphate isomerase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0166.
     
 0.792
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
   
 0.782
CV_4047
Probable L-asparaginase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1446.
  
    0.716
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
 
   
 0.685
nagE
protein-N p-phosphohistidine-sugar phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1264/TC:4.A.1.1.2.
 
  
 0.680
ptsG
protein-N p-phosphohistidine-sugar phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1264/TC:4.A.1.1.1.
 
  
 0.662
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1820.
 
   
 0.592
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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