STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rubBRubredoxin; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1773. (54 aa)    
Predicted Functional Partners:
CV_0153
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0501.
       0.799
CV_0154
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
       0.773
thiD
Hydroxymethylpyrimidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/COG0351.
  
    0.660
CV_0155
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1981.
       0.640
thiE
Probable thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
  
    0.631
CV_3739
Probable peroxidase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0450.
  
  
 0.585
CV_0156
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2954.
       0.551
fur
Ferric uptake regulation protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0735; Belongs to the Fur family.
  
  
 0.489
zur
Transcriptional repressor of znuABC operon; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0735; Belongs to the Fur family.
  
  
 0.481
CV_3909
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1678; Belongs to the UPF0301 (AlgH) family.
  
    0.428
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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