STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0160Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1266. (273 aa)    
Predicted Functional Partners:
CV_0438
Probable transmenbrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0842/TC:3.A.1.102.1.
  
  
 0.651
CV_2457
Probable ABC superfamily, transport protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0842/TC:3.A.1.102.1.
  
  
 0.651
CV_2458
Probable ABC transport system, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0842.
  
  
 0.651
CV_0024
Probable hydroxyethylthiazole kinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0739.
 
     0.573
sorA
Sulfite dehydrogenase - subunitA; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2041.
       0.572
sorB
Sulfite dehydrogenase - subunitB; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
       0.572
alkD
DNA alkylation repair enzyme; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
       0.544
purE
Phosphoribosylaminoimidazole carboxylase catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.497
purK
Phosphoribosylaminoimidazole carboxylase ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
       0.497
fofB
Fosfomycin resistance protein fofB; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0346.
       0.493
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.