Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
alkDDNA alkylation repair enzyme; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (229 aa)    
Predicted Functional Partners:
purE
Phosphoribosylaminoimidazole carboxylase catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
  
    0.804
purK
Phosphoribosylaminoimidazole carboxylase ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
 
     0.795
fofB
Fosfomycin resistance protein fofB; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0346.
       0.774
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Identified by sequence similarity; putative; ORF located using Blastx/COG0152; Belongs to the SAICAR synthetase family.
       0.697
CV_0160
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1266.
       0.544
mucD
Serine protease MucD precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0265; Belongs to the peptidase S1C family.
  
    0.499
htrA
Periplasmic serine protease; Identified by sequence similarity; putative; ORF located using Blastx/COG0265; Belongs to the peptidase S1C family.
  
    0.499
rimJ
Ribosomal-protein-alanine N-acetyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1670.
       0.438
purB
Adenylosuccinate lyase; Identified by sequence similarity; putative; ORF located using Blastx/COG0015; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.405
CV_1761
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0457.
  
     0.400
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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