Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pilU2Twitching mobility protein transport fimbria; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2805. (378 aa)    
Predicted Functional Partners:
pilC
Fimbrial assembly transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1459/TC:3.A.15.1.1.
 
   
 0.925
pilM
Type 4 fimbrial biogenesis protein PilM; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0849.
  
  
 0.837
CV_3826
Probable type IV prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.816
hofF
General secretion pathway protein F; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1459/TC:3.A.15.1.1.
 
   
 0.781
pilQ
Type 4 fimbrial biogenesis protein PilQ; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1450/TC:1.B.22.2.1.
  
  
 0.767
pilT
Twitching motility protein PilT; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2805.
 
  
0.726
pilO
Type 4 fimbrial biogenesis protein PilO; Identified by sequence similarity; putative; ORF located using Blastx/COG3167.
 
  
 0.715
pilN
Type 4 fimbrial biogenesis protein PilN; Identified by sequence similarity; putative; ORF located using Blastx.
  
  
 0.682
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
      
 0.643
pilP
Type 4 fimbrial biogenesis protein PilP; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3168.
  
   
 0.643
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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