Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ligT2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (174 aa)    
Predicted Functional Partners:
CV_0182
Probable response regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0457.
       0.773
CV_0181
Probable response regulator; Identified by sequence similarity; putative; ORF located using Blastx.
       0.658
fes
Enterochelin esterase; Identified by sequence similarity; putative; ORF located using Blastx/COG2382.
 
  
 0.607
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
  
 0.596
CV_2902
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3228; Belongs to the MtfA family.
 
     0.553
CV_3133
Probable flagellar protein FliJ; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2882.
  
     0.491
pilU2
Twitching mobility protein transport fimbria; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2805.
       0.474
pilT
Twitching motility protein PilT; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2805.
       0.438
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
    0.425
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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