STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
qorQuinone oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/COG0604. (324 aa)    
Predicted Functional Partners:
CV_3949
Probable 3-oxoacyl-[acyl-carrier-protein] synthase II; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0304; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
  
 0.901
fabF
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  
 0.899
CV_1541
Probable 3-oxoacyl-[acyl-carrier-protein] synthase II; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0304; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
  
 0.733
hetM
Polyketide synthase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG3320.
 
    
 0.727
entD
Enterobactin synthetase component D; Identified by sequence similarity; putative; ORF located using Blastx/COG2977; Belongs to the P-Pant transferase superfamily.
    
   0.694
CV_0212
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3150.
       0.602
CV_0808
Probable zinc-containing alcohol dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2130.
 
 
 0.595
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by sequence similarity; putative; ORF located using Blastx/COG0331.
 
    
 0.574
CV_2742
Hypothetical protein.
    
   0.513
CV_3848
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0631.
    
   0.513
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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