Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0259Probable glycosyl hyrolase, family 3; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1472. (505 aa)    
Predicted Functional Partners:
CV_4240
Probable chitinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3325; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.937
CV_1493
Probable b-N-acetylhexosaminidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3525.
    
 0.925
nagZ
Probable beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
  
  
 
0.922
CV_2935
Probable chitinase A; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx; Belongs to the glycosyl hydrolase 18 family.
  
  
 0.916
CV_3316
Probable chitinase; Identified by sequence similarity; putative; ORF located using Blastx/COG0178.
     
 0.908
CV_1440
Probable hydrolase transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
     
 0.904
CV_0261
Probable sugar ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1175.
 
   
 0.807
CV_0260
Probable ABC transporter sugar permease; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0395/TC:3.A.1.1.3.
     
 0.790
CV_0258
Probable ABC transporter, sugar ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1130; Belongs to the ABC transporter superfamily.
     
 0.779
CV_0262
Probable ABC transporter, periplasmic sugar-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1653/TC:3.A.1.1.3.
 
   
 0.716
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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