STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0260Probable ABC transporter sugar permease; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0395/TC:3.A.1.1.3. (286 aa)    
Predicted Functional Partners:
CV_0261
Probable sugar ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1175.
 0.999
CV_0262
Probable ABC transporter, periplasmic sugar-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1653/TC:3.A.1.1.3.
 
 0.997
CV_0258
Probable ABC transporter, sugar ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1130; Belongs to the ABC transporter superfamily.
 
 0.995
CV_2897
Probable sugar ABC transporter periplasmic sugar-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1653/TC:3.A.1.1.3.
 
 0.993
CV_2898
Probable sugar ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1175.
0.989
ugpA
Sn-glycerol-3-phosphate transport system, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1175/TC:3.A.1.1.3.
 
 0.980
ugpC
Sn-glycerol-3-phosphate transport, ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
 0.979
ugpB
Glycerol-3-phosphate-binding periplasmic protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1653/TC:3.A.1.1.3.
 
 
 0.953
CV_2899
Probable ABC transporter sugar permease; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0395/TC:3.A.1.1.4.
  
  
 
0.903
CV_0259
Probable glycosyl hyrolase, family 3; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1472.
     
 0.793
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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