Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0290Probable NAD(P)H2 dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2249. (178 aa)    
Predicted Functional Partners:
kefB
Glutathione-regulated potassium-efflux system protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1226/TC:2.A.37.1.2; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
 
 0.917
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.636
CV_0291
Probable tanscriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/COG1733.
     
 0.599
CV_2903
Probable Na/H+ antiporter; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0025/TC:2.A.37.2.3.
  
 
 0.545
CV_3943
Probable ATP-binding component of ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG1136.
   
    0.459
CV_4397
Probable ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1136.
   
    0.459
cpdB
2`,3`-cyclic-nucleotide 2`-phosphodiesterase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0737; Belongs to the 5'-nucleotidase family.
       0.434
dapC
Succinyldiaminopimelate transaminase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0436.
   
    0.422
CV_0995
Probable aspartate transaminase; Identified by sequence similarity; putative; ORF located using Blastx/COG0436.
   
    0.422
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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