STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0307Probable ABC transporter, ATP-binding/permease fusion; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2274/TC:3.A.1.109.1. (722 aa)    
Predicted Functional Partners:
CV_0306
Probable HlyD family secretion protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0845/TC:8.A.1.3.1.
 
 0.985
hylD
Secretion protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0845/TC:8.A.1.3.1.
 
 0.936
CV_0514
Probable HlyD family secretion protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0845/TC:8.A.1.3.1.
 
 0.920
cydC
ATP-binding/permease fusion ABC transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2274/TC:3.A.1.109.1.
  
  
 
0.917
CV_0308
Probable agglutination protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1538.
 
  
 0.895
CV_0069
Probable secretion protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0845/TC:8.A.1.3.1.
 
 0.886
CV_0305
Probable two-component response regulator; Identified by sequence similarity; putative; ORF located using Blastx/COG2197.
 
    0.874
hisP
ATP-binding component of histidine transport; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1126.
 
     
0.874
CV_0309
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3672.
 
   
 0.866
CV_0310
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2199.
 
  
 0.846
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.