Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0346Probable bacteriophage tail protein; Identified by sequence similarity; putative; ORF located using Blastx. (338 aa)    
Predicted Functional Partners:
CV_0345
Probable bacteriophage base plate protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
    0.988
CV_0347
Probable phage virion; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0840.
    0.984
CV_0343
Probable phage FluMu protein gp47; Identified by sequence similarity; putative; ORF located using Blastx/COG3299.
 
  
 0.963
CV_0342
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
 
    0.918
CV_0350
Probable phage sheath protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2217.
 
     0.802
CV_2111
Probable methyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0338.
 
    0.773
CV_0348
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0741.
       0.752
CV_2137
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
 
  
 0.712
CV_2138
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2369.
 
     0.698
CV_0344
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
    0.689
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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