Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0356Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2932; Belongs to the peptidase S24 family. (248 aa)    
Predicted Functional Partners:
CV_0345
Probable bacteriophage base plate protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
   
 0.691
CV_0343
Probable phage FluMu protein gp47; Identified by sequence similarity; putative; ORF located using Blastx/COG3299.
  
   
 0.658
CV_2138
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2369.
 
     0.625
CV_0342
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.623
CV_0346
Probable bacteriophage tail protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.622
CV_0347
Probable phage virion; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0840.
  
     0.599
CV_2161
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
 
     0.583
CV_0350
Probable phage sheath protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2217.
  
   
 0.579
CV_2137
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
 
    0.579
CV_2115
Probable bacteriophage tail fiber protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
  
 0.573
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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