Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0360Probable thermolabile hemolysin; Identified by sequence similarity; putative; ORF located using Blastx/COG3240. (417 aa)    
Predicted Functional Partners:
CV_0056
Probable aminopeptidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2234.
  
     0.688
lasB
Class 4 metalloprotease; Extracellular zinc metalloprotease.
  
   
 0.617
CV_0315
Probable peptidase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0339.
  
     0.587
CV_3255
Probable secreted protease; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.580
CV_2753
Probable disulphide-isomerase; Identified by sequence similarity; putative; ORF located using Blastx/COG0526.
  
     0.519
CV_0361
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1092; Belongs to the methyltransferase superfamily.
       0.515
CV_0516
Probable calcium binding hemolysin; Identified by sequence similarity; putative; ORF located using Blastx/COG2931/TC:1.C.11.1.4.
  
   
 0.420
CV_2714
Probable triacylglycerol lipase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1075.
  
   
 0.416
apeE
Lipase/esterase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3240/TC:1.B.12.8.1.
  
   
 0.402
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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