Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0378Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3545. (196 aa)    
Predicted Functional Partners:
CV_0377
Probable ribose ABC transporter, substrate binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1879/TC:3.A.1.2.1.
       0.651
CV_0376
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG3184.
       0.574
CV_0379
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1451.
       0.518
CV_0023
Probable vgr related protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3501.
   
    0.464
CV_3986
Probable vgr related protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3501.
   
    0.464
CV_0380
Probable acetyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0454.
       0.434
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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