Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0387Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2202. (334 aa)    
Predicted Functional Partners:
CV_2505
Probable two-component response regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
 
 0.985
CV_1008
Probable two-component response regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
   0.979
CV_2215
Probable response regulator receiver domain; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0784.
 
 0.978
rtn
Rtn like protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2200.
 
  
 0.963
CV_0114
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2200.
 
  
 0.952
CV_0359
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2206.
 
   0.952
CV_1189
Probable two-component system; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3437.
 
    0.927
CV_3246
Probable two component system, transcriptional regulatory protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3437.
 
    0.925
CV_2497
Probable two component system, transcriptional regulatory protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3437.
 
 
    0.915
CV_0883
Probable two component system, transcriptional regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3437/TC:3.A.1.115.1.
 
 
    0.914
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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