STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0439Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0271; Belongs to the BolA/IbaG family. (81 aa)    
Predicted Functional Partners:
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
  
 0.856
CV_3620
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0278; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 
 
 0.720
CV_0437
Probable ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1131.
       0.717
CV_0438
Probable transmenbrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0842/TC:3.A.1.102.1.
       0.717
rpsU
30S ribosomal protein S21; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0828; Belongs to the bacterial ribosomal protein bS21 family.
   
    0.562
acrR
Acrab operon repressor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1309.
       0.475
CV_0441
Latex allergen; Similar to Hevea brasiliensis latex allergen; identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3621.
       0.473
CV_2093
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx.
  
     0.462
surE
Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
   
    0.447
ptsA
Phosphoenolpyruvate-protein phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1925/TC:8.A.7.1.1.
     
 0.445
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.