Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0448Probable ABC transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0767. (257 aa)    
Predicted Functional Partners:
CV_0447
Probable ABC transport system substrate-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1463.
 0.999
CV_0449
Probable ABC transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1127.
 0.999
CV_0445
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3113.
  
 0.981
CV_0446
Probable ABC superfamily, transport protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2854.
 
 
 0.978
vacJ
Lipoprotein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2853.
 
   
 0.826
rsbR
sigma-B regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0840.
   
 
 0.723
CV_0879
Hypothetical protein.
   
 
 0.723
CV_1015
Hypothetical protein.
   
 
 0.723
CV_2511
Hypothetical protein.
   
 
 0.723
CV_2645
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1366.
   
 
 0.723
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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