Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0452Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0697/TC:2.A.7.3.4. (301 aa)    
Predicted Functional Partners:
CV_0453
Probable acetyl transferase; Identified by sequence similarity; putative; ORF located using Blastx/COG0454.
       0.648
dapC
Succinyldiaminopimelate transaminase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0436.
       0.611
CV_3191
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1652.
  
     0.554
CV_0583
Hypothetical protein.
  
     0.547
dapD
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG2171; Belongs to the transferase hexapeptide repeat family.
  
    0.511
CV_0523
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
   
 0.457
CV_3581
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2850.
  
     0.443
CV_2726
Probable transcriptional regulator, MarR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1846.
  
     0.428
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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