STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0484Probable type IV prepilin; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2165. (185 aa)    
Predicted Functional Partners:
pilE3
Type IV pilin; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2165.
 
  
 0.961
CV_0482
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3419.
 
  
 0.951
CV_0479
Probable type-4 fimbrial biogenesis protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2165.
 
  
 0.863
pilV
Type-4 fimbrial biogenesis PilV transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2165.
 
  
 0.850
CV_0480
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
 
  
 0.846
CV_4079
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2165.
 
  
 0.842
pilE1
Type IV pilin; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2165.
 
  
 0.837
pilP
Type 4 fimbrial biogenesis protein PilP; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3168.
  
  
 0.794
CV_3115
Probable type-4 fimbrial biogenesis pily1-related protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3419.
 
  
 0.794
pilN
Type 4 fimbrial biogenesis protein PilN; Identified by sequence similarity; putative; ORF located using Blastx.
 
  
 0.782
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.