Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0532Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0454. (161 aa)    
Predicted Functional Partners:
CV_0531
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0840.
       0.500
rsbR
sigma-B regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0840.
  
     0.481
CV_3163
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1670.
 
     0.479
sir2
Transcriptional regulator; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
 
  
 0.446
rsbT
sigma-B regulator protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0642.
  
     0.444
CV_0881
Hypothetical protein.
 
     0.427
CV_0533
Probable outer membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0729.
       0.411
CV_0534
Probable periplasmic protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2911.
       0.411
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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