Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0567Hypothetical protein. (151 aa)    
Predicted Functional Partners:
CV_0568
Probable anthranilate synthase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0147.
     
 0.916
CV_0569
Hypothetical protein.
       0.773
CV_0570
Hypothetical protein.
       0.773
CV_0558
Probable phosphoenolpyruvate-protein phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1925/TC:8.A.7.1.1.
      
 0.646
narX
Transmembrane nitrate/nitrite sensor kinase transcription regulator protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0642.
      
 0.646
narJ
Nitrate reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2180.
      
 0.646
CV_3659
Probable transcriptional regulator arsR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1510; Belongs to the GbsR family.
      
 0.646
CV_0571
Hypothetical protein.
       0.532
CV_3905
Probable transcriptional regulator, MarR family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1846.
      
 0.459
CV_1734
Probable outer membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1538/TC:1.B.17.2.1.
      
 0.457
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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