Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0582Hypothetical protein. (171 aa)    
Predicted Functional Partners:
CV_0583
Hypothetical protein.
     
 0.799
CV_0585
Probable RNA polymerase sigma factor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
       0.798
CV_0584
Hypothetical protein.
       0.773
CV_2787
Probable ribosome-associated heat shock protein Hsp15; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1188.
  
    0.710
petC
Ubiquinol-cytochrome c reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2857/TC:3.D.3.2.1.
  
     0.708
CV_2529
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3159.
  
     0.670
cyc
Cytochrome-c oxidase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2863.
  
     0.653
CV_1996
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.572
CV_4061
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0457.
 
     0.570
CV_2062
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0526.
  
     0.555
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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