Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0597Hypothetical protein. (147 aa)    
Predicted Functional Partners:
escU
Type III secretion system EscU protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1377/TC:3.A.6.1.1.
  
  
 0.800
sucA
2-oxoglutarate dehydrogenase E1 component; Identified by sequence similarity; putative; ORF located using Blastx/COG0567.
    
 
 0.791
sseC
Secretion system effector; Identified by sequence similarity; putative; ORF located using Blastx/TC:1.C.36.2.2.
  
  
 0.775
sseD
Secretion system effector; Identified by sequence similarity; putative; ORF located using Blastx.
  
  
 0.769
ssaL
Secretion system apparatus; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
  
 0.766
escV
Type III secretion system EscV protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1298/TC:3.A.6.1.1.
  
  
 0.766
invA
Invasion protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1298/TC:3.A.6.1.1.
  
  
 0.766
prgK
Cell invasion protein; Lipoprotein, may link inner and outer membranes; identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1766/TC:3.A.6.1.1.
  
  
 0.749
ssaJ
Type III secretion system apparatus lipoprotein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1766/TC:3.A.6.1.1.
  
  
 0.749
CV_2408
Hypothetical protein.
   
 
 0.742
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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