Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lysRTranscription regulator protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0583; Belongs to the LysR transcriptional regulatory family. (315 aa)    
Predicted Functional Partners:
CV_0692
Probable transport portein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.3.17.
 
     0.771
lipA
Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
      
 0.644
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
      
 0.534
ompC
Porin signal peptide protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3203.
      
 0.522
fabI
Enoyl-[acyl-carrier-protein] reductase (NADH); Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0623.
   
  
 0.492
CV_4095
Probable rhodanese-related sulfurtransferases; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0607.
  
    0.417
CV_4310
Probable transcription regulator, TetR family; Identified by sequence similarity; putative; ORF located using Blastx/COG1309.
  
 
   0.412
phaB
acetoacetyl-CoA reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1028.
      
 0.410
phaA
acetyl-CoA C-acetyltransferase; Involved in the production of polyhydroxyalkonic acids (PHAs), composed primarily of 3-hydroxybutyric acid (3HB) and 3- hydroxyvaleric acid (3HV); Belongs to the thiolase-like superfamily. Thiolase family.
      
 0.410
CV_0879
Hypothetical protein.
  
     0.407
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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