Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0705Probable FkbP-type peptidyl-prolyl cis-trans isomerase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0545. (113 aa)    
Predicted Functional Partners:
hptG
Probable chaperone heat shock protein hptG; Molecular chaperone. Has ATPase activity.
   
 0.799
CV_0706
Hypothetical protein.
   
 
 0.788
comL
Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.754
bamA
Probable outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.736
CV_2715
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1752.
   
 
 0.724
bamB
Conserved hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.699
lysC
Aspartate kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0527; Belongs to the aspartokinase family.
    
   0.698
CV_2721
Probable outer membrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2067/TC:1.B.9.1.1.
    
 
 0.698
fadL
Long-chain fatty acid transport protein precursor; Identified by sequence similarity; putative; ORF located using Blastx/COG2067/TC:1.B.9.1.1.
    
 
 0.698
infA1
Translation initiation factor; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
   0.690
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.