STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0711Probable transcriptional regulator, TetR family; Identified by sequence similarity; putative; ORF located using Blastx/COG1309. (200 aa)    
Predicted Functional Partners:
CV_0712
Hypothetical protein.
       0.693
CV_2483
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1309.
  
     0.656
CV_0710
Probable outer membrane multidrug resistance lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx/COG1538/TC:1.B.17.3.2.
 
     0.628
CV_0709
Probable multidrug resistance transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1566/TC:8.A.1.1.1.
 
     0.571
CV_3922
Probable transcription regulator, TetR family; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1309.
  
     0.521
CV_0713
Probable methyl-accepting chemotaxis transducer; Identified by sequence similarity; putative; ORF located using Blastx.
   
   0.516
CV_0708
Probable multidrug resistance protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.3.2; Belongs to the major facilitator superfamily.
       0.472
pth
aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.438
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.