Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0712Hypothetical protein. (185 aa)    
Predicted Functional Partners:
CV_0711
Probable transcriptional regulator, TetR family; Identified by sequence similarity; putative; ORF located using Blastx/COG1309.
       0.693
CV_0063
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.561
CV_0713
Probable methyl-accepting chemotaxis transducer; Identified by sequence similarity; putative; ORF located using Blastx.
       0.541
CV_0710
Probable outer membrane multidrug resistance lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx/COG1538/TC:1.B.17.3.2.
       0.488
CV_0708
Probable multidrug resistance protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.3.2; Belongs to the major facilitator superfamily.
       0.428
CV_0709
Probable multidrug resistance transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1566/TC:8.A.1.1.1.
       0.428
CV_4110
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
 
     0.413
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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