Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mmrMethylenomycin A resistance protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.3.10. (461 aa)    
Predicted Functional Partners:
CV_0720
Probable transcriptional regulator LysR family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
     
 0.827
CV_0709
Probable multidrug resistance transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1566/TC:8.A.1.1.1.
  
   
 0.662
emrA
Multidrug resistance secretion protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1566/TC:8.A.1.1.1.
  
   
 0.656
CV_0020
Probable MFS transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.2.7.
  
   
 0.652
hetM
Polyketide synthase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG3320.
     
 0.645
CV_4290
Probable transcriptional regulator LysR-family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
      
 0.641
CV_4374
Probable transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1752.
 
      0.640
catF
Beta-ketoadipyl CoA thiolase; Identified by sequence similarity; putative; ORF located using Blastx/COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
      
 0.620
CV_0718
Probable polyhydroxybutyrate depolymerase; Identified by sequence similarity; putative; ORF located using Blastx.
       0.572
CV_1510
Probable multidrug resistance protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.2.7.
  
   
 0.563
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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